陶鹏

2022年05月27日 15:21    点击:[]


陶鹏

个人信息

职称:助理研究员

邮箱:taopeng@ucas.ac.cn


主要研究方向

生物大分子的分子动力学模拟;人工智能与机器学习;非线性动力学


教育及工作经历

2022.08-至今:

国科大杭州高等研究院,助理研究员

2020.08-2022.8:

国科大杭州高等研究院,博士后

2015.09-2020.07:

华中科技大学,理论物理学,理学博士

2010.09-2015.07:

   江汉大学,物理学,理学学

 

科研项目

1.国家自然科学基金委员会, 专项项目, T2350003, 深度脉冲神经网络的混沌反向传播通用算法, 2024-01-01 至 2026-12-31, 300万元, 在研, 参与

2.国家自然科学基金委员会, 重点项目, 12131020, 基于多模态数据的健康临界状态的数学刻画与预警理论, 2022-01-01 至 2026-12-31, 252万元, 在研, 参与

3.国家自然科学基金委员会, 数学天元基金项目, 12126605, 支持病理诊断自动化的数学理论、方法与系统, 2022-01-01 至 2023-12-31, 100万元, 结题, 参与

4.国家自然科学基金委,面上项目,细胞内蛋白质折叠物理机制的理论研究,2019.1-2022.12, 64万,结题,参与

 

发表的论文 (#第一作者,*通讯作者)

1. P. Tao#*, Y. Si#, J. Xia#, Y. Xiao, (2025) Transcription reshapes RNA hairpin folding pathways revealed by all-atom molecular dynamics simulations. PLOS Computational Biology, 21 (2025) e1013472.

2.  P. Tao#*, Y. Xiao*, Pathway regulation mechanism by cotranslational protein folding, Communications Chemistry, 8 (2025) 226.

3.  P. Tao#, L. Chen*, Combinatorial optimization: From deep learning to large language models, Science China Mathematics, (2025).

4.  Z. Qin#, Y. Jiang#, P. Tao#, H. Liu, H. Zhong, X. Ding, R. Zhao, Y. Lu, L. Zhang, X. Chen, H. Zhuang, J. Wu, Z. Deng, X. Liu*, A ready-to-use RNA delivery platform modulated by metal ions, Chemical Engineering Journal, 506 (2025) 160170.

5.  Z. Wang#, P. Tao#, L. Chen*, Brain-inspired Chaotic Spiking Backpropagation, National Science Review, (2024) nwae037.

6.  P. Tao#, Q. Wang#, J. Shi#, X. Hao, X. Liu, B. Min, Y. Zhang, C. Li, H. Cui*, L. Chen*, Detecting dynamical causality by intersection cardinal concavity, Fundamental Research, (2023).

7.  P. Tao#, X. Hao#, J. Cheng, L. Chen*, Predicting time series by data-driven spatiotemporal information transformation, Information Sciences, 622 (2023) 859-872.

8.  P. Tao#, C. Du, Y. Xiao*, C. Zeng*, Data-driven detection of critical points of phase transitions in complex systems, Communications Physics, 6 (2023) 311.

9.  F. Ren#, K. Cao#, R. Gong, M. Yu, P. Tao, Y. Xiao, Z. Jiang*, The role of post-transcriptional modification on a new tRNAIle (GAU) identified from Ganoderma lucidum in its fragments’ cytotoxicity on cancer cells, International Journal of Biological Macromolecules, 229 (2023) 885-895.

10. L. Li#, R. Xia#, W. Chen#, Q. Zhao, P. Tao, L. Chen*, Single-cell causal network inferred by cross-mapping entropy, Briefings in Bioinformatics, 24 (2023) bbad281.

11. Y. You#, L. Zhang#*, P. Tao, S. Liu, L. Chen*, Spatiotemporal Transformer Neural Network for Time-Series Forecasting, Entropy, 24 (2022) 1651.

12. P. Tao#, Y. Xiao*, Role of cotranslational folding for β-sheet-enriched proteins: A perspective from molecular dynamics simulations, Physical Review E, 105 (2022) 024402.

13. P. Tao#, J. Cheng, L. Chen*, Brain-inspired chaotic backpropagation for MLP, Neural Networks, 155 (2022) 1-13.

14. K. Cao#, Y. Pan, T. Yan, P. Tao, Y. Xiao, Z. Jiang*, Antitumor activities of tRNA-derived fragments and tRNA halves from non-pathogenic Escherichia coli strains on colorectal cancer and their structure-activity relationship, Msystems, 7 (2022) e00164-00122.

15. P. Tao#, Y. Xiao*, Using the generalized Born surface area model to fold proteins yields more effective sampling while qualitatively preserving the folding landscape, Physical Review, 101 (2020) 062417.

16. P. Tao#, E. Wang, Y. Xiao*, Pathway regulation mechanism revealed by cotranslational folding of villin headpiece subdomain HP35, Physical Review, 101 (2020) 052403.

17. Q. Duan#, P. Tao#, J. Wang, Y. Xiao*, Molecular dynamics study of ways of RNA base-pair formation, Physical Review E, 102 (2020) 032403.

18. E. Wang#, P. Tao#, J. Wang, Y. Xiao*, A novel folding pathway of the villin headpiece subdomain HP35, Physical Chemistry Chemical Physics, 21 (2019) 18219-18226.


 

国科大杭州高等研究院生命与健康科学学院

浙江省杭州市西湖区象山支弄1号

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