陶鹏
个人信息
职称：助理研究员
邮箱：taopeng@ucas.ac.cn
主要研究方向
生物大分子的分子动力学模拟；人工智能与机器学习；非线性动力学
教育及工作经历
2022.08-至今：
国科大杭州高等研究院，助理研究员
2020.08-2022.8：
国科大杭州高等研究院，博士后
2015.09-2020.07：
华中科技大学，理论物理学，理学博士
2010.09-2015.07：
江汉大学，物理学，理学学
科研项目
1.国家自然科学基金委员会, 专项项目, T2350003, 深度脉冲神经网络的混沌反向传播通用算法, 2024-01-01 至 2026-12-31, 300万元, 在研, 参与
2.国家自然科学基金委员会, 重点项目, 12131020, 基于多模态数据的健康临界状态的数学刻画与预警理论, 2022-01-01 至 2026-12-31, 252万元, 在研, 参与
3.国家自然科学基金委员会, 数学天元基金项目, 12126605, 支持病理诊断自动化的数学理论、方法与系统, 2022-01-01 至 2023-12-31, 100万元, 结题, 参与
4.国家自然科学基金委，面上项目，细胞内蛋白质折叠物理机制的理论研究，2019.1-2022.12, 64万，结题，参与
发表的论文 (#第一作者，*通讯作者)
1. B. Zhang# , P. Tao# , J. Ren , J. Wei , Q. Wang , S. Cai , W. Huang , P. Li , H. Cai, L. Chen*, Explainable Data Generation from Observed Small Samples by Matrix Tri-Factorization, Nature Communications, 2026, In press
2. C. Qin#, Y. Ding#, P. Tao*, L. Chen*, Forecasting Extreme Temperature Events by Hankel-Augmented Contrastive Learning, National Science Review, 2026, nwag456
3. P. Tao#, K. Aihara, L. Chen*, Brain-inspired Chaotic Graph Backpropagation for Large-scale Combinatorial Optimization, IEEE transactions on neural networks and learning systems, (2026) 1-13.
4. Z. Qin#, Y. Qu#, W. Tian#, P. Tao#, L. Yang, R. Zhao, Q. Ying, H. Liu, Y. Lu, Y. Jiang, H. Zhuang, Z. Deng, G. Liu, W. Qin, X. Liu*, Tuning the loading position of mRNA onto ionizable neo-liposomes to improve endosomal escape, Cell Biomaterials, (2026).
5. Z. Wang#, P. Tao#, L. Chen*, Delayformer: Spatiotemporal Transformation for Predicting High-Dimensional Dynamics, Advanced Science, 13 (2025) e14671.
6. P. Tao#*, Y. Si#, J. Xia#, Y. Xiao, (2025) Transcription reshapes RNA hairpin folding pathways revealed by all-atom molecular dynamics simulations. PLOS Computational Biology, 21 (2025) e1013472.
7. P. Tao#*, Y. Xiao*, Pathway regulation mechanism by cotranslational protein folding, Communications Chemistry, 8 (2025) 226.
8. P. Tao#, L. Chen*, Combinatorial optimization: From deep learning to large language models, Science China Mathematics, (2025).
9. Z. Qin#, Y. Jiang#, P. Tao#, H. Liu, H. Zhong, X. Ding, R. Zhao, Y. Lu, L. Zhang, X. Chen, H. Zhuang, J. Wu, Z. Deng, X. Liu*, A ready-to-use RNA delivery platform modulated by metal ions, Chemical Engineering Journal, 506 (2025) 160170.
10. Z. Wang#, P. Tao#, L. Chen*, Brain-inspired Chaotic Spiking Backpropagation, National Science Review, (2024) nwae037.
11. P. Tao#, Q. Wang#, J. Shi#, X. Hao, X. Liu, B. Min, Y. Zhang, C. Li, H. Cui*, L. Chen*, Detecting dynamical causality by intersection cardinal concavity, Fundamental Research, (2023).
12. P. Tao#, X. Hao#, J. Cheng, L. Chen*, Predicting time series by data-driven spatiotemporal information transformation, Information Sciences, 622 (2023) 859-872.
13. P. Tao#, C. Du, Y. Xiao*, C. Zeng*, Data-driven detection of critical points of phase transitions in complex systems, Communications Physics, 6 (2023) 311.
14. F. Ren#, K. Cao#, R. Gong, M. Yu, P. Tao, Y. Xiao, Z. Jiang*, The role of post-transcriptional modification on a new tRNAIle (GAU) identified from Ganoderma lucidum in its fragments’ cytotoxicity on cancer cells, International Journal of Biological Macromolecules, 229 (2023) 885-895.
15. L. Li#, R. Xia#, W. Chen#, Q. Zhao, P. Tao, L. Chen*, Single-cell causal network inferred by cross-mapping entropy, Briefings in Bioinformatics, 24 (2023) bbad281.
16. Y. You#, L. Zhang#*, P. Tao, S. Liu, L. Chen*, Spatiotemporal Transformer Neural Network for Time-Series Forecasting, Entropy, 24 (2022) 1651.
17. P. Tao#, Y. Xiao*, Role of cotranslational folding for β-sheet-enriched proteins: A perspective from molecular dynamics simulations, Physical Review E, 105 (2022) 024402.
18. P. Tao#, J. Cheng, L. Chen*, Brain-inspired chaotic backpropagation for MLP, Neural Networks, 155 (2022) 1-13.
19. K. Cao#, Y. Pan, T. Yan, P. Tao, Y. Xiao, Z. Jiang*, Antitumor activities of tRNA-derived fragments and tRNA halves from non-pathogenic Escherichia coli strains on colorectal cancer and their structure-activity relationship, Msystems, 7 (2022) e00164-00122.
20. P. Tao#, Y. Xiao*, Using the generalized Born surface area model to fold proteins yields more effective sampling while qualitatively preserving the folding landscape, Physical Review E, 101 (2020) 062417.
21. P. Tao#, E. Wang, Y. Xiao*, Pathway regulation mechanism revealed by cotranslational folding of villin headpiece subdomain HP35, Physical Review E, 101 (2020) 052403.
22. Q. Duan#, P. Tao#, J. Wang, Y. Xiao*, Molecular dynamics study of ways of RNA base-pair formation, Physical Review E, 102 (2020) 032403.
23. E. Wang#, P. Tao#, J. Wang, Y. Xiao*, A novel folding pathway of the villin headpiece subdomain HP35, Physical Chemistry Chemical Physics, 21 (2019) 18219-18226.
